JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UMPS_chr3_124725452_124754273	0/0	t0095	5225	1	1	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0096	5213	1	1	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0097	5221	1	1	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0098	5223	1	1	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0099	5203	1	0	0	1	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0100	5197	1	0	0	1	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	t0101	5195	1	0	0	0	0	1	copy fasta	UMPS	chr3	124725452	124754273
UNC119B_chr12_120705458_120728640	1/0	t0001	3626	110	1	17	74	9	8	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/1	t0002	3626	54	15	19	10	3	6	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0003	3624	53	0	0	49	0	4	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0004	3626	47	17	2	25	1	2	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0005	3626	18	11	3	4	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0006	3626	17	15	2	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0007	3626	14	7	1	0	0	6	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0008	3626	12	1	7	0	2	2	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0009	3626	12	8	0	0	0	4	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0010	3626	7	0	5	0	1	1	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0011	3626	7	0	4	0	2	1	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0012	3626	5	5	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0013	3626	4	4	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0014	3626	3	0	0	0	0	3	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0015	3626	3	3	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0016	3626	3	0	3	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0017	3626	2	2	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0018	3626	2	0	0	2	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0019	3626	2	2	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0020	3626	2	2	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0021	3626	2	0	2	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0022	3626	2	0	0	2	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0023	3626	1	1	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0024	3626	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0025	3626	1	0	1	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0026	3626	1	1	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0027	3626	1	0	0	0	0	1	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0028	3626	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0029	3626	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0030	3626	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0031	3626	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0032	3624	1	0	0	1	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0033	3626	1	0	1	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0034	3626	1	1	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0035	3626	1	1	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0036	3626	1	0	0	0	0	1	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0037	3626	1	0	1	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0038	3626	1	1	0	0	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	t0039	3626	1	0	0	0	0	1	copy fasta	UNC119B	chr12	120705458	120728640
UNC119_chr17_28541708_28557624	1/1	t0001	657	351	81	63	156	8	41	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0002	657	17	1	9	0	6	1	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0003	657	10	8	2	0	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0004	657	2	2	0	0	0	0	copy fasta	UNC119	chr17	28541708	28557624