JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC119_chr17_28541708_28557624	0/0	t0005	657	2	0	0	2	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0006	657	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0007	657	1	1	0	0	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0008	657	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	t0009	657	1	1	0	0	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC13A_chr19_17596336_17693354	1/0	t0001	4874	144	14	35	64	5	25	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0002	4875	29	15	4	6	2	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/1	t0003	4873	19	6	0	8	0	4	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0004	4875	13	0	1	6	1	5	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0005	4876	9	0	7	0	1	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0006	4872	8	1	4	0	3	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0007	4873	8	0	0	7	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0008	4872	8	8	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0009	4875	7	1	3	3	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0010	4874	6	4	2	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0011	4877	5	5	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0012	4873	4	0	2	0	0	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0013	4872	4	0	4	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0014	4875	4	4	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0015	4872	3	3	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0016	4876	3	0	1	0	2	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0017	4875	3	0	2	0	1	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0018	4873	3	2	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0019	4877	3	3	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0020	4876	3	3	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0021	4874	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0022	4872	2	0	0	0	0	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0023	4874	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0024	4875	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0025	4874	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0026	4875	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0027	4875	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0028	4872	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0029	4872	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0030	4875	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0031	4874	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0032	4878	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0033	4873	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0034	4873	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0035	4835	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0036	4876	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0037	4874	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0038	4874	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0039	4874	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0040	4874	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0041	4873	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0042	4875	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0043	4877	1	0	0	0	1	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0044	4873	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0045	4875	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354