JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC13A_chr19_17596336_17693354	0/0	t0046	4874	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0047	4873	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0048	4874	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	t0049	4874	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13B_chr9_35157009_35410335	1/1	t0001	1578	206	66	26	80	6	26	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0002	1578	8	5	1	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0003	1578	4	0	3	0	1	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0004	1578	2	0	0	0	0	2	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0005	1578	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0006	1578	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0007	1578	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	t0008	1578	1	0	0	0	1	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13C_chr15_53973441_54633605	0/1	t0001	2236	18	12	2	1	1	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	1/0	t0002	2236	12	8	2	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0003	2241	7	0	0	7	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0004	2241	7	1	3	2	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0005	2241	6	0	1	3	0	2	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0006	2236	6	1	0	2	1	2	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0007	2236	6	1	3	1	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0008	2234	5	3	1	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0009	2241	5	0	3	0	0	2	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0010	2241	5	0	2	2	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0011	2236	4	4	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0012	2243	4	0	4	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0013	2234	4	3	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0014	2236	3	3	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0015	2236	3	2	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0016	2236	3	0	3	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0017	2243	3	0	0	1	1	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0018	2236	3	3	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0019	2236	3	0	2	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0020	2234	3	0	0	3	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0021	2236	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0022	2240	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0023	2241	2	0	0	2	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0024	2234	2	1	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0025	2236	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0026	2241	2	0	0	1	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0027	2236	2	0	0	2	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0028	2236	2	2	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0029	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0030	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0031	2241	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0032	2243	1	0	0	0	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0033	2234	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0034	2234	1	0	0	0	1	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0035	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0036	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0037	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0038	2236	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605