JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC13C_chr15_53973441_54633605	0/0	t0039	2241	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0040	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0041	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0042	2241	1	0	0	0	1	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0043	2236	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0044	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0045	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0046	2234	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0047	2236	1	0	0	0	0	1	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0048	2236	1	0	0	0	1	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0049	2236	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0050	2241	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0051	2240	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0052	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0053	2241	1	0	1	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0054	2234	1	0	0	1	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0055	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0056	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0057	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0058	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0059	2236	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	t0060	2234	1	1	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13D_chr17_75822225_75849404	1/1	t0001	808	370	67	69	178	16	38	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0002	808	24	21	3	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0003	808	6	5	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0004	830	4	4	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0005	808	3	0	0	3	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0006	808	2	0	0	0	0	2	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0007	808	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0008	808	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	t0009	808	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC45A_chr15_90930285_90959093	1/1	t0001	418	235	63	42	73	15	40	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0002	418	132	20	26	80	1	5	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0003	418	15	5	4	5	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0004	418	10	6	2	1	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0005	418	2	2	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0006	418	1	0	0	1	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	t0007	418	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45B_chr17_35142817_35194343	0/0	t0001	2877	130	45	15	53	6	11	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0002	2877	75	10	14	40	2	9	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0003	2877	63	6	10	43	0	4	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0004	2878	58	2	22	24	1	9	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	1/1	t0005	2879	51	14	12	11	3	9	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0006	2878	15	2	1	10	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0007	2877	7	0	0	7	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0008	2878	6	5	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0009	2877	6	0	0	6	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0010	2877	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0011	2877	2	2	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0012	2879	2	0	1	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343