JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC45B_chr17_35142817_35194343	0/0	t0013	2877	2	0	0	2	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0014	2877	2	1	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0015	2879	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0016	2877	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0017	2877	1	0	0	0	0	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0018	2877	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0019	2877	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0020	2877	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0021	2879	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0022	2878	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0023	2877	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0024	2877	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0025	2878	1	0	0	0	0	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	t0026	2879	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC50_chr2_98603589_98623515	1/0	t0001	354	294	63	57	132	8	33	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/1	t0002	354	104	7	27	54	4	11	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0003	354	4	4	0	0	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0004	357	4	4	0	0	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0005	354	3	3	0	0	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0006	354	2	2	0	0	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0007	354	1	0	0	1	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0008	354	1	1	0	0	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC50_chr2_98603589_98623515	0/0	t0009	354	1	0	0	1	0	0	copy fasta	UNC50	chr2	98603589	98623515
UNC5A_chr5_176805559_176885898	0/1	t0001	1205	144	29	33	48	7	26	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	1/0	t0002	1205	76	24	20	23	1	7	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0003	1205	20	20	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0004	1205	6	2	1	3	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0005	1205	5	5	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0006	1205	3	3	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0007	1205	3	3	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0008	1205	2	2	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0009	1205	1	0	1	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0010	1205	1	1	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0011	1205	1	1	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0012	1205	1	0	0	0	0	1	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0013	1205	1	1	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0014	1205	1	1	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0015	1205	1	0	0	1	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0016	1205	1	0	0	1	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	t0017	1205	1	0	1	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5B_chr10_71207570_71307864	1/1	t0001	4004	68	4	23	21	5	13	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0002	4006	41	0	4	33	0	4	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0003	4008	23	0	0	23	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0004	4010	23	0	0	21	0	2	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0005	4012	13	1	6	0	2	4	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0006	4006	12	1	1	10	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0007	4011	12	12	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0008	4000	10	0	0	8	0	2	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0009	4002	9	0	3	1	2	3	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0010	4006	9	7	0	0	1	1	copy fasta	UNC5B	chr10	71207570	71307864