JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC5B_chr10_71207570_71307864	0/0	t0061	4004	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0062	4006	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0063	4010	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0064	4010	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0065	4010	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0066	4012	1	0	0	0	1	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0067	4012	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0068	4012	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0069	4012	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0070	4014	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0071	4006	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0072	4004	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0073	4004	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0074	4004	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0075	4006	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0076	4006	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0077	4010	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0078	4002	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0079	4004	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0080	4006	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	t0081	4004	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5CL_chr6_41021895_41044221	1/1	t0001	1600	337	78	65	146	10	36	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0002	1599	18	0	1	15	0	2	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0003	1600	7	0	0	7	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0004	1600	5	5	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0005	1599	3	3	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0006	1600	3	3	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0007	1600	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0008	1600	2	0	0	1	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0009	1600	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0010	1600	1	0	0	0	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0011	1600	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0012	1600	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0013	1600	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	t0014	1600	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5C_chr4_95157504_95553973	0/0	t0001	6847	69	17	8	30	2	12	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0002	6843	48	5	17	14	5	7	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0003	6847	12	10	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0004	6847	8	8	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0005	6847	7	0	0	7	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0006	6842	6	6	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0007	6847	5	0	0	5	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0008	6843	4	0	3	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0009	6847	4	0	0	4	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0010	6843	3	3	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0011	6843	3	1	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0012	6847	2	2	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0013	6847	2	2	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0014	6847	2	2	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0015	6843	2	0	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973