JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
UNC5C_chr4_95157504_95553973	0/0	t0016	6846	2	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0017	6843	2	0	0	0	2	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0018	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0019	6847	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0020	6843	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0021	6847	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0022	6843	1	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0023	6843	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0024	6847	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0025	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0026	6847	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0027	6847	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0028	6847	1	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0029	6847	1	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0030	6847	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0031	6847	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0032	6847	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0033	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0034	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0035	6843	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0036	6843	1	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0037	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0038	6847	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0039	6847	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	t0040	6843	1	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5D_chr8_35230475_35801540	0/0	t0001	6288	21	6	2	6	7	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0002	6289	9	5	0	3	1	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0003	6289	4	4	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0004	6288	4	4	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0005	6287	3	3	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0006	6289	2	2	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0007	6288	2	2	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0008	6287	2	2	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0009	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0010	6289	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0011	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0012	6287	1	0	1	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0013	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0014	6289	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0015	6288	1	0	1	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0016	6289	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0017	6289	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0018	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0019	6289	1	0	0	1	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0020	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0021	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0022	6287	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0023	6287	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0024	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	t0025	6288	1	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540