JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNC79_chr14_93425939_93712876	0/1	t0001	1064	191	78	36	44	12	20	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	t0002	1064	2	2	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC80_chr2_209766832_210004296	0/0	t0001	3943	81	31	17	17	7	9	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0002	3943	40	4	12	15	1	8	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0003	3943	22	14	2	5	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0004	3943	12	1	2	8	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0005	3943	5	5	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0006	3943	5	4	0	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0007	3943	4	0	2	0	1	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0008	3940	3	3	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/1	t0009	3943	3	0	1	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0010	3943	2	1	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0011	3943	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0012	3943	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0013	3943	1	0	0	0	1	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0014	3943	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0015	3943	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0016	3943	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	1/0	t0017	3943	1	0	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0018	3943	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0019	3943	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	t0020	3943	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC93A_chr6_167286315_167321014	0/0	t0001	738	110	25	19	47	5	14	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0002	738	74	8	11	46	3	6	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0003	738	71	12	11	34	2	12	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0004	738	71	16	14	34	6	1	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/1	t0005	738	70	21	18	21	2	7	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0006	738	44	10	7	19	0	8	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0007	738	3	3	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0008	738	2	0	0	2	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	1/0	t0009	738	1	0	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0010	738	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	t0011	738	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93B1_chr11_67986100_68009097	1/1	t0001	501	186	28	41	94	6	15	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0002	501	91	34	16	31	4	6	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0003	501	66	10	11	31	6	8	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0004	501	10	10	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0005	501	8	8	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0006	501	4	0	0	2	0	2	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0007	501	1	0	0	0	0	1	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0008	501	1	0	0	1	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0009	501	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0010	501	1	0	0	1	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	t0011	501	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNCX_chr7_1227872_1242326	1/1	t0001	496	370	76	64	181	9	38	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	t0002	496	34	20	12	0	2	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	t0003	496	1	0	0	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	t0004	496	1	0	0	0	1	0	copy fasta	UNCX	chr7	1227872	1242326
UNG_chr12_109092597_109115992	1/1	t0001	1107	391	79	61	199	12	38	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0002	1109	37	3	3	22	2	7	copy fasta	UNG	chr12	109092597	109115992