JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNG_chr12_109092597_109115992	0/0	t0003	1108	7	4	3	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0004	1079	4	4	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0005	1107	2	2	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0006	1107	1	0	0	1	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0007	1107	1	1	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0008	1107	1	0	1	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0009	1109	1	0	0	1	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0010	1107	1	0	0	0	0	1	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0011	1108	1	0	0	1	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0012	1109	1	0	0	1	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0013	1107	1	0	1	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0014	1107	1	0	1	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0015	1109	1	0	0	1	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	t0016	1109	1	1	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNKL_chr16_1358205_1419704	0/0	t0001	3048	92	5	7	66	5	9	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0002	3048	41	3	16	14	1	7	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0003	3048	23	4	7	0	4	8	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/1	t0004	3048	20	2	8	3	1	5	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0005	3048	9	0	1	6	1	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0006	3048	9	0	6	3	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	1/0	t0007	3049	9	2	3	0	0	3	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0008	3049	6	2	0	4	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0009	3048	6	0	4	0	1	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0010	3048	6	6	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0011	3048	4	0	3	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0012	3049	4	3	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0013	3048	4	4	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0014	3048	4	4	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0015	3048	4	4	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0016	3049	4	4	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0017	3049	4	3	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0018	3049	3	0	2	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0019	3048	3	3	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0020	3048	3	1	0	2	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0021	3049	3	3	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0022	3049	2	0	0	2	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0023	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0024	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0025	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0026	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0027	3049	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0028	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0029	3048	2	1	0	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0030	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0031	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0032	3048	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0033	3048	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0034	3048	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0035	3048	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0036	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704