JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNKL_chr16_1358205_1419704	0/0	t0037	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0038	3048	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0039	3049	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0040	3049	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0041	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0042	3048	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0043	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0044	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0045	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0046	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0047	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0048	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0049	3049	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0050	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0051	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0052	3049	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0053	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0054	3048	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0055	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0056	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0057	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0058	3048	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0059	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0060	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0061	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0062	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0063	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0064	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0065	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0066	3048	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0067	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0068	3049	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0069	3048	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0070	3048	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	t0071	3050	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNK_chr17_75779806_75830799	1/1	t0001	1458	206	42	41	97	8	16	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0002	1458	60	1	3	52	0	4	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0003	1460	24	8	5	2	4	5	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0004	1458	16	14	2	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0005	1432	11	10	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0006	1458	10	9	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0007	1458	6	0	2	3	0	1	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0008	1457	6	5	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0009	1458	5	0	0	5	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0010	1458	3	0	0	3	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0011	1458	2	0	0	2	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0012	1458	2	0	2	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0013	1458	2	0	0	2	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0014	1458	1	0	0	0	0	1	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0015	1458	1	0	0	0	0	1	copy fasta	UNK	chr17	75779806	75830799