JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UNK_chr17_75779806_75830799	0/0	t0016	1458	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0017	1458	1	1	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	t0018	1458	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UPB1_chr22_24490332_24533390	1/1	t0001	2669	138	27	28	62	6	13	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0002	2669	50	10	13	13	5	9	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0003	2669	40	0	7	23	4	6	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0004	2668	38	6	5	21	0	6	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0005	2667	9	7	1	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0006	2669	9	9	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0007	2670	6	0	1	4	1	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0008	2668	4	3	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0009	2669	4	4	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0010	2666	4	4	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0011	2668	4	0	1	2	0	1	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0012	2670	3	0	2	0	0	1	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0013	2662	3	3	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0014	2670	3	0	1	2	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0015	2669	3	0	0	3	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0016	2669	2	0	0	0	0	2	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0017	2669	2	0	0	2	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0018	2669	2	2	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0019	2669	2	0	2	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0020	2669	2	0	0	2	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0021	2668	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0022	2669	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0023	2670	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0024	2668	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0025	2669	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0026	2669	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0027	2668	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0028	2667	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0029	2669	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0030	2669	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0031	2668	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0032	2667	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0033	2656	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0034	2667	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0035	2668	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0036	2666	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0037	2668	1	0	0	0	0	1	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0038	2669	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0039	2669	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0040	2668	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0041	2668	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0042	2669	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0043	2669	1	0	0	0	0	1	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	t0044	2662	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPF1_chr19_18826959_18873230	0/1	t0001	1965	268	41	43	133	9	41	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	1/0	t0002	1965	57	1	7	40	4	4	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0003	1965	22	21	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230