Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTL10_chr20_33661943_33673525	0/0	t0003	846	75	4	11	47	2	11	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0004	846	49	29	10	8	0	2	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0005	846	15	14	1	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0006	846	3	3	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0007	846	1	0	0	1	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0008	846	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0009	846	1	0	0	0	1	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0010	846	1	0	0	1	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0011	846	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0012	846	1	1	0	0	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	0/0	t0013	846	1	0	0	1	0	0	copy fasta	ACTL10	chr20	33661943	33673525
ACTL6A_chr3_179557926_179593407	1/1	t0001	565	378	89	72	168	11	36	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	t0002	565	1	1	0	0	0	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6A_chr3_179557926_179593407	0/0	t0003	565	1	0	0	0	1	0	copy fasta	ACTL6A	chr3	179557926	179593407
ACTL6B_chr7_100638097_100661448	0/0	t0001	244	324	84	58	138	11	33	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	1/1	t0002	244	32	3	7	9	1	10	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	t0003	244	1	1	0	0	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	t0004	244	1	0	0	1	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	t0005	244	1	0	0	0	0	1	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL6B_chr7_100638097_100661448	0/0	t0006	244	1	0	1	0	0	0	copy fasta	ACTL6B	chr7	100638097	100661448
ACTL7A_chr9_108857266_108868756	0/1	t0001	184	414	99	64	196	14	40	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	1/0	t0002	184	65	1	18	34	4	7	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7A_chr9_108857266_108868756	0/0	t0003	184	3	0	2	0	0	1	copy fasta	ACTL7A	chr9	108857266	108868756
ACTL7B_chr9_108849588_108860986	1/1	t0001	152	469	100	86	217	18	46	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL7B_chr9_108849588_108860986	0/0	t0002	152	1	0	0	1	0	0	copy fasta	ACTL7B	chr9	108849588	108860986
ACTL8_chr1_17750333_17832063	1/1	t0001	741	333	72	58	158	14	29	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0002	741	9	0	1	7	0	1	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0003	741	5	4	1	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0004	741	4	0	0	4	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0005	741	4	4	0	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0006	741	4	4	0	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0007	741	3	0	1	0	0	2	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0008	741	2	2	0	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0009	741	1	0	0	1	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL8_chr1_17750333_17832063	0/0	t0010	741	1	0	1	0	0	0	copy fasta	ACTL8	chr1	17750333	17832063
ACTL9_chr19_8692400_8703795	0/1	t0001	146	301	55	59	134	12	40	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	1/0	t0002	146	53	28	13	1	4	6	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	t0003	146	1	0	0	1	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTL9_chr19_8692400_8703795	0/0	t0004	146	1	1	0	0	0	0	copy fasta	ACTL9	chr19	8692400	8703795
ACTMAP_chr19_40735861_40755477	0/0	t0001	2245	91	9	26	41	4	11	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	1/1	t0002	2247	80	10	19	39	3	7	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0003	2247	55	2	1	47	2	3	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0004	2245	33	1	7	16	4	5	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0005	2245	23	12	8	1	2	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0006	2245	22	11	1	10	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0007	2245	17	14	3	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0008	2247	14	14	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0009	2245	10	0	7	1	0	2	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0010	2246	9	0	0	8	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0011	2245	7	0	0	7	0	0	copy fasta	ACTMAP	chr19	40735861	40755477