Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C12orf4_chr12_4482735_4543469	0/0	t0006	2159	5	4	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0007	2159	4	4	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0008	2159	3	3	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/1	t0009	2159	3	1	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0010	2159	2	1	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0011	2162	2	2	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0012	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0013	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0014	2159	1	0	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0015	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0016	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0017	2159	1	0	1	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0018	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0019	2159	1	0	0	1	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0020	2159	1	1	0	0	0	0	copy fasta	C12orf4	chr12	4482735	4543469
C12orf4_chr12_4482735_4543469	0/0	t0021	2159	1	0	0	0	0	1	copy fasta	C12orf4	chr12	4482735	4543469
C12orf50_chr12_87975035_88034401	1/1	t0001	467	255	71	52	96	10	24	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	t0002	468	13	13	0	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	t0003	467	3	2	1	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf50_chr12_87975035_88034401	0/0	t0004	405	1	0	1	0	0	0	copy fasta	C12orf50	chr12	87975035	88034401
C12orf54_chr12_48477498_48501524	1/0	t0001	521	319	62	61	154	11	30	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/1	t0002	521	90	2	21	45	7	14	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	t0003	521	26	24	2	0	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf54_chr12_48477498_48501524	0/0	t0004	521	1	0	0	1	0	0	copy fasta	C12orf54	chr12	48477498	48501524
C12orf56_chr12_64259762_64395758	0/0	t0001	2615	115	25	24	49	6	11	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/1	t0002	2615	96	16	18	50	3	8	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0003	2615	59	7	14	26	3	9	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	1/0	t0004	2615	14	13	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0005	2615	12	12	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0006	2615	2	2	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0007	2615	2	0	0	0	0	2	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0008	2615	2	2	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0009	2615	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0010	2615	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0011	2615	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0012	2615	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0013	2615	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0014	2615	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0015	2615	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0016	2615	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0017	2615	1	0	0	1	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf56_chr12_64259762_64395758	0/0	t0018	2615	1	1	0	0	0	0	copy fasta	C12orf56	chr12	64259762	64395758
C12orf57_chr12_6939022_6951002	1/0	t0001	181	412	87	72	191	16	45	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0002	181	7	7	0	0	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0003	181	2	0	0	0	0	2	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0004	181	2	0	0	2	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0005	181	1	0	0	1	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0006	181	1	0	1	0	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0007	181	1	0	1	0	0	0	copy fasta	C12orf57	chr12	6939022	6951002
C12orf57_chr12_6939022_6951002	0/0	t0008	181	1	0	0	0	0	1	copy fasta	C12orf57	chr12	6939022	6951002