JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UPF1_chr19_18826959_18873230	0/0	t0004	1965	14	11	1	0	1	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0005	1965	9	8	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0006	1961	5	0	0	5	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0007	1965	4	0	0	4	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0008	1965	3	3	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0009	1965	2	0	2	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0010	1965	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0011	1965	1	0	0	0	0	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0012	1965	1	0	0	0	0	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0013	1965	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0014	1965	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0015	1965	1	1	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0016	1965	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0017	1965	1	1	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0018	1965	1	1	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	t0019	1965	1	0	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF2_chr10_11915022_12047809	0/1	t0001	1349	176	43	32	81	6	13	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	1/0	t0002	1350	112	23	22	53	1	12	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0003	1351	13	6	0	5	0	2	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0004	1349	8	6	2	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0005	1350	5	0	0	5	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0006	1349	4	0	0	4	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0007	1349	4	4	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0008	1350	3	0	0	0	3	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0009	1349	2	0	0	1	0	1	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0010	1350	1	1	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0011	1350	1	1	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0012	1350	1	1	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0013	1349	1	0	1	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0014	1350	1	0	1	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0015	1351	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	t0016	1349	1	1	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF3A_chr13_114276601_114310817	1/1	t0001	940	424	73	78	211	14	46	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0002	940	6	4	2	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0003	937	5	4	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0004	940	3	3	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0005	940	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0006	937	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0007	940	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0008	940	1	0	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0009	940	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0010	940	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0011	940	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0012	940	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0013	940	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	t0014	940	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3B_chrX_119829022_119857963	1/1	t0001	892	249	49	44	111	13	30	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	t0002	892	27	24	3	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	t0003	892	3	0	0	3	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	t0004	892	2	0	2	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963