JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UPF3B_chrX_119829022_119857963	0/0	t0005	892	1	1	0	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPK1A_chr19_35661517_35683481	1/1	t0001	489	289	78	58	104	11	36	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	t0002	493	129	16	18	80	3	12	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	t0003	493	1	0	0	1	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	t0004	493	1	0	0	1	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1B_chr3_119168598_119210143	1/1	t0001	1246	323	72	59	153	10	27	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0002	1246	47	2	14	24	2	5	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0003	1246	27	6	1	20	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0004	1246	7	0	0	7	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0005	1246	5	5	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0006	1246	3	3	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0007	1246	3	3	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0008	1246	2	2	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0009	1246	2	2	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0010	1246	1	1	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	t0012	1246	1	1	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK2_chr11_118951298_118963559	1/1	t0001	380	397	90	74	180	12	39	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	t0002	380	1	0	0	0	0	1	copy fasta	UPK2	chr11	118951298	118963559
UPK3A_chr22_45279949_45300874	1/1	t0001	221	400	76	73	192	14	43	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	t0002	221	42	18	4	18	0	2	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	t0003	221	1	0	0	0	0	1	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	t0004	221	1	0	1	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3BL1_chr7_102632025_102647791	0/0	t0001	550	38	0	12	25	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0002	550	26	0	6	16	1	3	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0003	549	18	3	4	7	1	3	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0004	550	17	4	5	8	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0005	550	6	0	0	6	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0006	552	6	0	2	3	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0007	549	6	0	3	3	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0008	551	4	2	0	2	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0009	551	3	0	0	3	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0010	550	3	0	0	3	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0011	549	2	2	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0012	550	2	0	0	2	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0013	550	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0014	549	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0015	550	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0016	550	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0017	550	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0018	550	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0019	551	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0020	549	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	t0021	551	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL2_chr7_102532919_102548696	0/0	t0001	560	33	2	4	19	3	5	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0002	560	30	1	5	20	0	4	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0003	559	23	1	5	12	2	3	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0004	560	19	0	1	15	1	2	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0005	557	14	4	1	7	2	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/1	t0006	559	8	1	2	4	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696