JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UPK3BL2_chr7_102532919_102548696	0/0	t0007	61	7	0	5	0	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0008	559	7	1	3	2	0	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0009	559	6	0	3	1	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0010	559	4	4	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0011	559	4	1	0	3	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0012	560	4	0	4	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0013	559	3	0	2	1	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	1/0	t0014	559	3	1	0	0	0	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0015	560	3	1	1	1	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0016	560	3	3	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0017	560	3	0	0	1	0	2	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0018	560	2	0	0	2	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0019	559	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0020	559	1	0	0	1	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0021	557	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0022	558	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0023	558	1	0	0	1	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	t0024	558	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3B_chr7_76505552_76521522	0/1	t0001	354	179	55	40	67	5	11	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0002	1420	145	16	25	76	5	23	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0003	354	4	4	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0004	354	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0005	354	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0006	354	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0007	354	1	1	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0008	353	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0009	1420	1	0	1	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0010	1420	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	t0011	1420	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	1/0	t0012	1420	1	0	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPP1_chr7_48084265_48113736	0/0	t0001	732	230	37	36	118	9	30	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	1/1	t0002	732	163	24	40	80	2	15	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	t0003	732	32	32	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	t0004	732	1	1	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	t0005	732	1	0	0	0	1	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	t0006	732	1	0	0	0	0	1	copy fasta	UPP1	chr7	48084265	48113736
UPP2_chr2_158096876_158141154	1/1	t0001	1453	193	34	54	74	9	20	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0002	1453	50	8	4	33	1	4	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0003	1454	37	3	5	27	2	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0004	1454	16	16	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0005	1454	10	8	2	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0006	1453	9	9	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0007	1453	8	5	2	0	0	1	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0008	1453	4	4	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0009	1453	3	0	1	0	0	2	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0010	1454	2	1	0	1	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0011	1454	2	0	0	0	0	2	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0012	1453	2	2	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0013	1454	1	1	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0014	1454	1	0	0	0	0	1	copy fasta	UPP2	chr2	158096876	158141154