JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UPP2_chr2_158096876_158141154	0/0	t0015	1453	1	0	0	1	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0016	1453	1	1	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0017	1453	1	1	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	t0018	1453	1	1	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPRT_chrX_75269085_75309885	0/1	t0001	1545	199	35	50	82	6	25	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	0/0	t0002	1545	19	12	1	1	0	5	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	1/0	t0003	1545	16	13	2	0	0	0	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	0/0	t0004	1545	9	9	0	0	0	0	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	0/0	t0005	1545	7	2	2	0	3	0	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	0/0	t0006	1545	6	3	3	0	0	0	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	0/0	t0007	1545	1	0	0	1	0	0	copy fasta	UPRT	chrX	75269085	75309885
UQCC1_chr20_35297578_35416973	1/1	t0001	1368	174	52	30	57	10	23	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0002	1368	52	12	7	23	2	8	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0003	1368	14	12	2	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0004	1368	8	8	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0005	1368	4	3	1	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0006	1368	1	0	0	1	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0007	1368	1	0	0	0	0	1	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0008	1368	1	1	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	t0009	1358	1	0	0	1	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC2_chr6_33691764_33716700	0/0	t0001	904	213	10	37	129	5	32	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	1/0	t0002	904	119	58	23	26	6	5	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/1	t0003	904	21	4	5	9	2	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0004	904	16	8	1	7	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0005	904	8	0	1	4	0	3	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0006	905	6	0	0	6	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0007	904	6	6	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0008	904	6	5	1	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0009	904	2	2	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0010	904	1	1	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0011	904	1	0	1	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0012	904	1	0	1	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0013	904	1	0	0	0	1	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	t0014	904	1	0	0	1	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC3_chr11_62666673_62678686	0/1	t0001	1646	112	19	27	57	4	4	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0002	1645	80	9	22	29	4	16	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0003	1646	42	7	16	10	1	8	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	1/0	t0004	1646	20	16	2	0	1	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0005	1647	18	3	2	11	0	2	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0006	1643	15	15	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0007	1647	6	6	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0008	1648	5	4	0	0	0	1	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0009	1646	5	4	1	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0010	1647	4	1	1	1	0	1	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0011	1647	3	2	1	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0012	1647	3	0	2	0	0	1	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0013	1645	2	2	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0014	1646	2	0	0	2	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0015	1646	1	0	1	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0016	1646	1	0	0	0	0	1	copy fasta	UQCC3	chr11	62666673	62678686