JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UQCC3_chr11_62666673_62678686	0/0	t0017	1645	1	0	0	0	0	1	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0018	1644	1	0	1	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0019	1642	1	1	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0020	1646	1	0	0	1	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0021	1643	1	1	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0022	1646	1	1	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0023	1646	1	1	0	0	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0024	1646	1	0	0	1	0	0	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	0/0	t0025	1646	1	0	0	0	0	1	copy fasta	UQCC3	chr11	62666673	62678686
UQCC4_chr16_1414752_1425747	1/1	t0001	519	360	91	72	134	16	45	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	t0002	519	2	0	2	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	t0003	519	1	0	0	0	0	1	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	t0004	519	1	1	0	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC5_chr3_52531605_52546890	1/0	t0001	1557	198	34	44	74	11	34	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/1	t0002	1557	132	10	34	75	4	8	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0003	1557	25	25	0	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0004	1557	18	13	2	0	1	2	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0005	1554	6	5	1	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0006	1557	2	2	0	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0007	1557	1	0	1	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0008	1557	1	0	1	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0009	1557	1	0	0	1	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0010	1557	1	1	0	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0011	1557	1	1	0	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0012	1557	1	0	1	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC5_chr3_52531605_52546890	0/0	t0013	1557	1	1	0	0	0	0	copy fasta	UQCC5	chr3	52531605	52546890
UQCC6_chr12_103945194_103962215	0/0	t0001	1471	82	8	2	60	2	10	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0002	1487	75	4	11	49	3	8	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0003	1487	64	11	6	45	2	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/1	t0004	1487	64	24	16	1	6	16	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0005	1487	63	1	3	58	0	1	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0006	1471	40	8	23	1	3	5	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	1/0	t0007	1487	31	17	9	0	2	2	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0008	1487	29	21	1	0	0	7	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0009	1471	4	4	0	0	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0010	1471	4	0	3	1	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0011	1487	1	0	0	1	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0012	1487	1	1	0	0	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0013	1487	1	1	0	0	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0014	1471	1	0	0	0	0	1	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0015	1471	1	0	0	1	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	t0016	1487	1	0	0	1	0	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCR10_chr22_29762369_29775413	1/1	t0001	725	404	91	76	181	16	38	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	t0002	727	4	4	0	0	0	0	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	t0003	725	2	0	0	0	0	2	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	t0004	725	2	2	0	0	0	0	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	t0005	725	1	0	0	1	0	0	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	t0006	725	1	1	0	0	0	0	copy fasta	UQCR10	chr22	29762369	29775413
UQCR11_chr19_1592169_1610462	1/1	t0001	1129	238	71	46	75	11	33	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0002	1129	63	4	7	48	0	4	copy fasta	UQCR11	chr19	1592169	1610462