JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UQCR11_chr19_1592169_1610462	0/0	t0003	1129	57	20	18	13	3	3	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0004	1129	2	0	2	0	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0005	1129	1	1	0	0	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0006	1129	1	0	1	0	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0007	1129	1	0	0	1	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	t0008	1129	1	0	0	1	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCRB_chr8_96217947_96240545	1/1	t0001	8124	107	8	20	57	5	15	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0002	8128	60	6	15	24	4	11	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0003	8128	31	15	1	15	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0004	8122	14	0	2	12	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0005	8124	12	1	9	2	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0006	8128	11	4	0	4	0	3	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0007	8128	10	1	7	0	1	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0008	8126	9	8	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0009	8124	8	0	0	8	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0010	8128	8	2	1	4	1	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0011	8124	7	0	4	0	3	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0012	8124	7	6	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0013	8128	7	7	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0014	8130	5	5	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0015	8126	4	0	0	4	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0016	8128	4	3	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0017	8124	4	0	0	4	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0018	8126	3	0	0	3	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0019	8128	3	3	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0020	8124	2	2	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0021	8128	2	0	2	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0022	8128	2	0	0	0	2	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0023	8128	2	0	0	0	0	2	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0024	8124	2	0	0	2	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0025	8124	2	0	2	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0026	8124	2	2	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0027	8128	2	2	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0028	8128	2	2	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0029	8120	2	0	0	2	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0030	8126	2	1	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0031	8124	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0032	8139	1	0	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0033	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0034	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0035	8128	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0036	8128	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0037	8128	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0038	8128	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0039	8128	1	0	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0040	8128	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0041	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0042	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0043	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0044	8128	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545