JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UQCRB_chr8_96217947_96240545	0/0	t0045	8130	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0046	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0047	8124	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0048	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0049	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0050	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0051	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0052	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0053	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0054	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0055	8124	1	0	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0056	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0057	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0058	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0059	8124	1	0	1	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0060	8107	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0061	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0062	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0063	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0064	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0065	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0066	8130	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0067	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0068	8126	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0069	8126	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0070	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0071	8124	1	0	0	0	0	1	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0072	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0073	8126	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0074	8128	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0075	8124	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0076	8120	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0077	8124	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	t0078	8126	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRC1_chr3_48594002_48614646	1/1	t0001	153	300	88	55	108	14	33	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	t0002	153	4	0	4	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	t0003	153	2	0	1	0	0	1	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	t0004	153	1	0	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	t0005	153	1	0	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC2_chr16_21948361_21988660	1/1	t0001	553	355	89	56	168	4	36	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	t0002	553	4	0	0	0	0	4	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	t0003	553	2	0	0	2	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	t0004	553	1	1	0	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRFS1_chr19_29200320_29218151	0/1	t0001	2260	168	14	35	87	4	27	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0002	2262	116	26	17	58	2	13	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0003	2262	80	14	15	46	2	3	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	1/0	t0004	2262	17	6	6	0	4	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0005	2262	13	11	2	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0006	2262	8	5	3	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0007	2262	7	7	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151