JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UQCRFS1_chr19_29200320_29218151	0/0	t0008	2262	4	4	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0009	2252	4	0	0	4	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0010	2260	3	0	0	3	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0011	2261	3	0	0	3	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0012	2262	3	3	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0013	2262	2	2	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0014	2262	1	1	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0015	2262	1	0	1	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0016	2260	1	0	0	0	0	1	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0017	2252	1	0	0	1	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0018	2260	1	0	1	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0019	2262	1	1	0	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0020	2262	1	0	0	1	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	t0021	2260	1	0	0	1	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRH_chr1_46298698_46321776	1/1	t0001	262	429	89	81	198	14	45	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	t0002	262	2	2	0	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	t0003	262	2	1	1	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	t0004	262	1	0	0	0	0	1	copy fasta	UQCRH	chr1	46298698	46321776
UQCRQ_chr5_132861642_132873847	0/1	t0001	1324	152	19	28	74	7	23	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	1/0	t0002	1325	151	25	24	89	3	9	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0003	1325	53	24	6	21	0	2	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0004	1325	52	2	8	29	5	8	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0005	1324	9	6	3	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0006	1325	9	0	8	0	1	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0007	1325	8	8	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0008	1324	4	4	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0009	1325	3	3	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0010	1325	3	3	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0011	1325	2	0	0	2	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0012	1325	2	1	1	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0013	1324	1	0	0	1	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0014	1324	1	0	0	1	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0015	1325	1	1	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	t0016	1325	1	0	0	1	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
URAD_chr13_27972717_27993693	1/1	t0001	446	394	72	70	192	17	41	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	t0002	446	32	26	5	0	1	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	t0003	446	1	0	0	0	0	1	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	t0004	446	1	0	1	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URB1_chr21_32306018_32398012	0/0	t0001	4003	80	1	18	43	5	13	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	1/0	t0002	4003	54	1	12	35	2	3	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0003	4003	51	17	11	14	2	7	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/1	t0004	4002	28	10	10	5	1	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0005	4003	14	0	0	13	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0006	4003	12	12	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0007	4004	9	1	3	5	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0008	4003	6	6	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0009	4002	6	6	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0010	4004	5	0	0	4	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0011	4002	5	0	0	5	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0012	4002	5	0	1	4	0	0	copy fasta	URB1	chr21	32306018	32398012