JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
URB1_chr21_32306018_32398012	0/0	t0013	4002	5	5	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0014	4003	4	4	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0015	4003	4	2	1	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0016	4002	4	3	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0017	4003	3	3	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0018	4003	3	3	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0019	4002	3	2	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0020	4003	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0021	4003	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0022	4003	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0023	4004	2	1	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0024	4003	2	0	2	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0025	4002	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0026	4003	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0027	4002	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0028	4003	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0029	4003	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0030	4003	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0031	4003	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0032	4003	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0033	4003	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0034	4003	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0035	4004	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0036	4004	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0037	4004	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0038	4004	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0039	4003	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0040	4004	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0041	4003	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0042	4002	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0043	4003	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0044	4002	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0045	4002	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0046	4003	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0047	4002	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	t0048	4003	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB2_chr1_229621247_229665200	1/0	t0001	1027	97	41	20	18	2	15	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0002	1027	95	12	18	58	1	6	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/1	t0003	1026	91	9	14	50	4	13	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0004	1026	22	9	4	3	2	4	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0005	1026	19	6	0	13	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0006	1027	6	6	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0007	1026	5	0	0	5	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0008	1026	5	0	4	0	1	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0009	1027	4	3	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0010	1027	4	0	0	4	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0011	1027	2	1	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0012	1027	2	2	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0013	1027	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0014	1026	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200