JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
URB2_chr1_229621247_229665200	0/0	t0015	1027	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	t0016	1027	1	1	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URGCP_chr7_43870913_43911596	0/1	t0001	778	202	46	41	81	11	22	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	1/0	t0002	776	118	16	21	63	6	11	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0003	778	45	11	1	33	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0004	778	16	15	1	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0005	778	11	0	7	3	1	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0006	778	5	5	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0007	778	4	0	4	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0008	778	1	0	0	0	0	1	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0009	778	1	0	1	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	t0010	778	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URI1_chr19_29937239_30021612	1/1	t0001	1853	234	61	46	90	10	25	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0002	1853	65	0	10	46	0	9	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0003	1853	7	6	1	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0004	1853	5	3	2	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0005	1853	4	3	1	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0006	1853	2	2	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0007	1853	2	2	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0008	1853	2	2	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0009	1853	1	1	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0010	1853	1	1	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0011	1853	1	1	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0012	1853	1	1	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0013	1853	1	0	0	1	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0014	1853	1	0	0	1	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	t0015	1853	1	1	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URM1_chr9_128366374_128397016	1/1	t0001	2290	171	18	24	97	4	26	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0002	2294	52	0	3	43	1	5	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0003	2294	28	4	0	22	0	2	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0004	2294	26	22	2	0	1	1	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0005	2294	19	18	1	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0006	2290	14	3	7	1	2	1	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0007	2294	6	6	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0008	2294	5	5	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0009	2290	2	2	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0010	2290	2	0	2	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0011	2293	2	2	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0012	2294	2	2	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0013	2290	2	0	2	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0014	2290	2	0	0	0	2	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0015	2293	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0016	2294	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0017	2294	1	0	1	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0018	2290	1	0	1	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0019	2321	1	0	1	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0020	2290	1	0	0	1	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0021	2290	1	0	0	1	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0022	2320	1	0	0	1	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0023	2294	1	0	0	0	0	1	copy fasta	URM1	chr9	128366374	128397016