Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C12orf60_chr12_14798670_14829415	1/1	t0001	849	343	87	59	135	16	44	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	t0002	849	33	5	18	6	2	2	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	t0003	849	11	0	0	11	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf60_chr12_14798670_14829415	0/0	t0004	849	1	0	1	0	0	0	copy fasta	C12orf60	chr12	14798670	14829415
C12orf71_chr12_27076057_27087578	1/1	t0001	213	424	96	76	192	14	44	copy fasta	C12orf71	chr12	27076057	27087578
C12orf75_chr12_105325691_105376518	0/1	t0001	1120	179	33	22	102	1	20	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	1/0	t0002	1120	171	35	34	77	10	14	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0003	1120	29	15	6	0	4	4	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0004	1120	12	3	7	0	0	2	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0005	1120	4	0	1	0	2	1	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0006	1120	2	0	2	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0007	1120	1	0	0	0	1	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0008	1120	1	0	0	1	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0009	1120	1	1	0	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0010	1120	1	0	0	0	0	1	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0011	1120	1	0	0	0	0	1	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0012	1120	1	0	1	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0013	1120	1	0	0	1	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0014	1120	1	1	0	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0015	1120	1	0	0	1	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0016	1120	1	0	1	0	0	0	copy fasta	C12orf75	chr12	105325691	105376518
C12orf75_chr12_105325691_105376518	0/0	t0017	1120	1	0	0	0	0	1	copy fasta	C12orf75	chr12	105325691	105376518
C12orf76_chr12_110036177_110053522	1/1	t0001	1225	295	65	69	115	12	32	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0002	1226	32	7	0	23	0	2	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0003	1223	10	8	1	0	0	1	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0004	1225	8	6	2	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0005	1225	3	3	0	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0006	1225	2	0	0	2	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0007	1225	1	0	0	1	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0008	1225	1	1	0	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0009	1225	1	1	0	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0010	1225	1	0	0	0	0	1	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0011	1225	1	0	0	1	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C12orf76_chr12_110036177_110053522	0/0	t0012	1223	1	1	0	0	0	0	copy fasta	C12orf76	chr12	110036177	110053522
C13orf42_chr13_51077119_51116274	0/1	t0001	2098	182	35	25	96	8	17	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0002	2102	110	23	14	50	2	21	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0003	2098	95	8	12	62	5	8	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0004	2098	19	0	17	0	2	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0005	2102	11	8	2	0	0	1	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0006	2102	11	7	4	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	1/0	t0007	2098	5	1	2	0	1	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0008	2102	4	4	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0009	2098	4	4	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0010	2102	3	3	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0011	2098	2	0	0	0	0	2	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0012	2102	1	0	0	1	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0013	2102	1	1	0	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0014	2098	1	0	1	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0015	2102	1	0	0	1	0	0	copy fasta	C13orf42	chr13	51077119	51116274
C13orf42_chr13_51077119_51116274	0/0	t0016	2102	1	0	1	0	0	0	copy fasta	C13orf42	chr13	51077119	51116274