JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
URM1_chr9_128366374_128397016	0/0	t0024	2294	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	t0025	2290	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
UROC1_chr3_126476166_126522773	0/0	t0001	1234	143	20	31	67	7	18	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/1	t0002	1234	125	20	17	71	5	11	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	1/0	t0003	1234	31	15	10	4	0	1	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0004	1232	19	1	0	11	0	7	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0005	1232	17	15	2	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0006	1234	15	12	3	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0007	1234	9	0	5	1	1	2	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0008	1234	8	0	3	1	1	3	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0009	1234	3	2	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0010	1232	3	0	0	3	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0011	1234	3	3	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0012	1234	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0013	1234	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0014	1234	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	t0015	1234	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROD_chr1_45007254_45020575	1/1	t0001	90	399	92	73	174	16	42	copy fasta	UROD	chr1	45007254	45020575
UROD_chr1_45007254_45020575	0/0	t0002	90	1	0	1	0	0	0	copy fasta	UROD	chr1	45007254	45020575
UROS_chr10_125783586_125828258	1/1	t0001	539	255	45	47	127	9	25	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0002	539	139	33	21	65	5	15	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0003	539	5	5	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0004	539	5	0	0	3	0	2	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0005	539	2	2	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0006	539	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	t0007	539	1	0	0	1	0	0	copy fasta	UROS	chr10	125783586	125828258
USB1_chr16_57996407_58026618	0/1	t0001	1455	163	50	26	54	12	20	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0002	1455	101	2	25	62	2	10	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0003	1455	31	30	1	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0004	1451	9	0	0	8	0	1	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0005	1472	7	0	0	6	0	1	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0006	1451	6	6	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0007	1455	3	3	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0008	1451	3	0	0	3	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0009	1451	2	0	1	0	0	1	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0010	1447	2	2	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0011	1438	2	0	2	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0012	1455	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0013	1455	1	0	1	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0014	1455	1	0	0	0	0	1	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0015	1469	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	1/0	t0016	1451	1	0	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0017	1447	1	1	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	t0018	1451	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618
USE1_chr19_17210357_17224829	1/1	t0001	66	422	100	72	186	18	44	copy fasta	USE1	chr19	17210357	17224829
USF1_chr1_161034251_161050977	1/0	t0001	875	159	40	15	85	2	16	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0002	874	66	4	23	28	4	7	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0003	872	45	3	10	23	3	6	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/1	t0004	874	42	15	9	10	4	3	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0005	876	16	1	3	6	2	4	copy fasta	USF1	chr1	161034251	161050977