JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USH1C_chr11_17488900_17549416	0/0	t0013	546	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0014	546	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0015	546	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0016	542	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0017	546	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1G_chr17_74911083_74928255	0/1	t0001	2175	133	12	33	62	6	19	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0002	2175	99	3	14	65	5	12	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0003	2175	68	15	4	37	7	5	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0004	2175	62	34	9	15	0	4	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0005	2173	15	14	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0006	2175	6	1	5	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0007	2166	6	6	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0008	2175	5	1	0	2	0	2	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0009	2175	3	0	2	0	0	1	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0010	2175	3	1	2	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0011	2175	2	0	0	0	0	2	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0012	2175	2	2	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0013	2175	2	2	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0014	2175	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0015	2175	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0016	2175	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0017	2175	1	0	0	0	0	1	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0018	2175	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0019	2175	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0020	2175	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0021	2175	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0022	2175	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0023	2173	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	1/0	t0024	2173	1	0	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0025	2175	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0026	2175	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0027	2166	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0028	2175	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	t0029	2175	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH2A_chr1_215617891_216428448	0/1	t0001	3330	33	19	7	0	2	4	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0002	3330	14	10	3	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0003	3329	7	7	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0004	3330	4	1	3	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0005	3330	4	3	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0006	3330	3	3	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0007	3330	2	1	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0008	3329	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0009	3330	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	1/0	t0010	3330	1	0	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0011	3330	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0012	3330	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0013	3330	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	t0014	3328	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USHBP1_chr19_17244171_17269745	0/1	t0001	1178	273	53	51	132	10	26	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	1/0	t0002	1178	85	12	15	34	7	16	copy fasta	USHBP1	chr19	17244171	17269745