JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USHBP1_chr19_17244171_17269745	0/0	t0003	1178	13	11	2	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0004	1776	9	8	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0005	1178	7	1	2	0	0	4	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0006	1779	6	5	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0007	1775	4	4	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0008	1178	3	0	0	3	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0009	1179	2	1	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0010	1178	2	0	0	2	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0011	1775	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0012	1178	1	0	0	0	1	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0013	1178	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0014	1179	1	0	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0015	1779	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0016	1178	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0017	1778	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	t0018	1178	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USO1_chr4_75719577_75819286	0/0	t0001	1235	245	76	55	69	9	36	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/1	t0002	1235	35	3	11	11	5	4	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0003	1235	2	2	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0004	1235	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	1/0	t0005	1235	1	0	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0006	1235	1	0	0	0	0	1	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0007	1235	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0008	1235	1	0	0	0	0	1	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	t0009	1235	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USP10_chr16_84695000_84784922	1/1	t0001	932	367	64	67	182	16	36	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0002	932	23	0	1	18	1	3	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0003	932	13	13	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0004	933	7	5	2	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0005	932	4	0	0	4	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0006	932	3	0	0	3	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0007	932	3	3	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0008	932	2	0	0	2	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0009	932	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0010	932	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0011	933	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0012	932	1	0	0	0	0	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0013	932	1	0	0	0	1	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0014	932	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0015	932	1	1	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	t0016	932	1	0	0	1	0	0	copy fasta	USP10	chr16	84695000	84784922
USP11_chrX_47228009_47253328	1/1	t0001	434	264	75	49	104	8	26	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	t0002	435	13	1	0	11	0	1	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	t0003	433	2	0	0	2	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	t0004	434	1	0	0	0	1	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	t0005	434	1	0	1	0	0	0	copy fasta	USP11	chrX	47228009	47253328
USP11_chrX_47228009_47253328	0/0	t0006	435	1	0	0	1	0	0	copy fasta	USP11	chrX	47228009	47253328
USP12_chr13_27061156_27176811	1/0	t0001	3300	66	24	12	12	2	15	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0002	3300	38	6	10	16	2	4	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0003	3300	16	1	5	7	0	3	copy fasta	USP12	chr13	27061156	27176811