JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP14_chr18_153557_219629	0/0	t0044	3498	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0045	3490	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0046	3489	1	0	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0047	3503	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0048	3497	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0049	3488	1	0	0	0	0	1	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0050	3487	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0051	3511	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0052	3488	1	0	0	0	0	1	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0053	3492	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0054	3493	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0055	3492	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0056	3488	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0057	3496	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0058	3488	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0059	3488	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0060	3503	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0061	3507	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0062	3499	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0063	3499	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0064	3500	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0065	3490	1	0	0	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0066	3498	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP15_chr12_62255404_62421389	0/1	t0001	12045	68	29	7	22	1	8	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0002	12027	65	2	13	46	2	2	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	1/0	t0003	12026	52	0	14	29	4	4	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0004	12026	28	2	5	14	0	7	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0005	12033	15	0	4	5	1	5	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0006	12026	10	9	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0007	12026	10	2	7	0	1	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0008	12026	9	9	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0009	12028	7	0	1	6	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0010	12022	6	6	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0011	12026	5	0	0	5	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0012	12026	4	4	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0013	12025	3	2	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0014	12026	3	2	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0015	12029	3	0	2	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0016	12026	3	0	1	2	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0017	12027	2	0	0	2	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0018	12028	2	1	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0019	12026	2	0	0	2	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0020	12026	2	2	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0021	12027	2	2	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0022	12047	2	0	0	1	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0023	12033	2	0	2	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0024	12026	2	0	2	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0025	12026	1	0	0	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0026	12027	1	0	0	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0027	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389