JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP20_chr9_129830458_129886828	0/0	t0010	1549	2	0	0	0	1	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0011	1548	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0012	1549	1	0	0	0	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0013	1549	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0014	1549	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0015	1549	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0016	1549	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0017	1549	1	0	0	0	0	1	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	t0018	1549	1	0	0	0	0	1	copy fasta	USP20	chr9	129830458	129886828
USP21_chr1_161154500_161170723	1/1	t0001	618	360	73	59	177	17	32	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	t0002	618	8	1	5	0	1	1	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	t0003	618	2	2	0	0	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	t0004	618	1	0	0	0	0	1	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	t0005	618	1	0	0	1	0	0	copy fasta	USP21	chr1	161154500	161170723
USP22_chr17_20994596_21048011	1/1	t0001	3612	105	21	21	51	4	6	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0002	3598	55	0	13	32	3	7	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0003	3615	33	5	19	0	0	9	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0004	3615	29	1	4	12	4	8	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0005	3615	18	0	0	18	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0006	3615	9	9	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0007	3615	6	6	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0008	3615	6	5	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0009	3615	5	4	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0010	3614	5	5	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0011	3597	5	0	0	5	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0012	3613	5	4	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0013	3612	5	0	2	3	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0014	3615	4	3	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0015	3612	4	3	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0016	3612	3	3	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0017	3614	3	0	0	3	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0018	3598	2	0	0	2	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0019	3615	2	0	0	2	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0020	3616	2	0	1	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0021	3615	2	2	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0022	3612	2	1	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0023	3615	2	2	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0024	3616	2	2	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0025	3614	2	0	0	0	1	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0026	3598	2	0	0	2	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0027	3598	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0028	3613	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0029	3599	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0030	3615	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0031	3592	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0032	3615	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0033	3615	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0034	3614	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0035	3615	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0036	3616	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011