JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP22_chr17_20994596_21048011	0/0	t0037	3614	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0038	3614	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0039	3616	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0040	3616	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0041	3598	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0042	3614	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0043	3598	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0044	3598	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0045	3616	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0046	3614	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0047	3614	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0048	3597	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0049	3598	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0050	3599	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0051	3614	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0052	3615	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0053	3615	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0054	3615	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0055	3612	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0056	3612	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0057	3613	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0058	3612	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0059	3612	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0060	3612	1	0	1	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0061	3612	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0062	3614	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0063	3612	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	t0064	3599	1	1	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP24_chr1_55061359_55220364	0/1	t0001	2938	124	48	21	39	5	10	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0002	2938	27	8	1	16	1	1	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0003	2936	13	1	6	2	2	2	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	1/0	t0004	2938	12	8	3	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0005	2938	4	4	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0006	2938	3	2	1	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0007	2938	2	2	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0008	2938	2	0	1	0	0	1	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0009	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0010	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0011	2938	1	0	0	1	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0012	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0013	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0014	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0015	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0016	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0017	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0018	2938	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	t0019	2938	1	0	1	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP25_chr21_15724982_15885064	1/1	t0001	2002	116	28	14	52	5	15	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0002	1999	32	10	5	15	1	1	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0003	2002	14	1	3	8	0	2	copy fasta	USP25	chr21	15724982	15885064