JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP25_chr21_15724982_15885064	0/0	t0004	1999	13	11	2	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0005	1999	6	6	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0006	2002	4	4	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0007	1990	4	4	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0008	2001	3	3	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0009	1999	3	3	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0010	1999	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0011	1999	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0012	2002	1	0	0	1	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0013	1999	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	t0014	2001	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP26_chrX_133018168_133102109	1/0	t0001	2784	98	10	19	53	5	10	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0002	2784	60	7	11	24	6	12	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0003	2784	26	2	0	22	0	2	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0004	2785	18	16	2	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0005	2784	9	0	0	9	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0006	2785	8	7	0	0	0	1	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0007	2787	4	4	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0008	2785	3	0	0	3	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0009	2785	3	1	0	2	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0010	2785	2	2	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0011	2784	2	0	0	2	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0012	2786	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0013	2785	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0014	2786	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0015	2784	1	0	0	0	0	1	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0016	2783	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0017	2784	1	0	0	0	0	1	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0018	2785	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0019	2785	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0020	2785	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0021	2786	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/1	t0022	2783	1	0	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0023	2784	1	1	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0024	2784	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0025	2783	1	0	1	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0026	2785	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0027	2785	1	0	1	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0028	2784	1	0	0	0	0	1	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0029	2784	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	t0030	2785	1	0	0	1	0	0	copy fasta	USP26	chrX	133018168	133102109
USP27X_chrX_49874484_49887558	0/0	t0001	1760	135	3	21	89	5	17	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	1/1	t0002	1759	70	33	15	13	0	7	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0003	1759	13	13	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0004	1777	6	0	6	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0005	1760	6	2	2	1	0	1	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0006	1758	5	1	3	0	0	1	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0007	1761	5	0	2	3	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0008	1756	3	3	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0009	1761	2	0	0	2	0	0	copy fasta	USP27X	chrX	49874484	49887558