JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP27X_chrX_49874484_49887558	0/0	t0010	1761	2	0	0	2	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0011	1797	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0012	1795	1	0	1	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0013	1759	1	0	1	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0014	1760	1	0	0	0	0	1	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0015	1758	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0016	1759	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0017	1761	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0018	1760	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0019	1760	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0020	1761	1	0	1	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0021	1762	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0022	1760	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0023	1758	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0024	1760	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0025	1759	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0026	1760	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0027	1756	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0028	1759	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0029	1760	1	0	0	0	0	1	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0030	1762	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0031	1759	1	1	0	0	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	t0032	1761	1	0	0	1	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP28_chr11_113792875_113880572	0/0	t0001	1438	77	17	13	39	2	6	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	1/1	t0002	1437	69	19	14	29	3	2	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0003	1430	48	0	3	44	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0004	1432	34	1	8	14	4	7	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0005	1436	32	14	9	5	0	4	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0006	1439	20	5	4	8	0	3	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0007	1442	14	0	0	13	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0008	1433	7	3	1	1	0	2	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0009	1433	6	6	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0010	1440	6	2	1	0	0	3	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0011	1429	5	3	2	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0012	1433	5	0	4	0	1	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0013	1443	5	0	0	5	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0014	1437	4	4	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0015	1441	4	2	1	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0016	1430	2	1	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0017	1438	2	0	1	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0018	1432	2	0	1	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0019	1442	2	0	0	2	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0020	1438	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0021	1437	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0022	1438	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0023	1430	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0024	1439	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0025	1437	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0026	1440	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0027	1437	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572