JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP28_chr11_113792875_113880572	0/0	t0028	1438	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0029	1438	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0030	1437	1	0	0	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0031	1437	1	0	0	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0032	1440	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0033	1437	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0034	1437	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0035	1441	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0036	1439	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0037	1440	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0038	1437	1	0	0	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	t0039	1443	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP29_chr19_57114985_57136926	0/0	t0001	995	165	34	32	67	9	23	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0002	995	104	16	13	74	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	1/1	t0003	995	74	25	17	12	5	13	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0004	995	42	0	5	33	1	3	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0005	995	10	9	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0006	995	6	0	0	6	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0007	995	5	4	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0008	995	4	4	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0009	995	2	0	0	2	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0010	995	1	0	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0011	995	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0012	995	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	t0013	995	1	0	0	0	1	0	copy fasta	USP29	chr19	57114985	57136926
USP2_chr11_119350215_119386690	0/1	t0001	1881	60	21	11	15	2	10	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0002	1882	55	4	10	23	8	10	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0003	1880	23	2	8	7	2	4	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0004	1881	7	7	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0005	1879	5	2	2	0	1	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0006	1883	5	0	3	2	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0007	1879	4	4	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0008	1879	4	4	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0009	1877	4	0	1	3	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0010	1881	3	2	0	0	0	1	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0011	1880	3	3	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	1/0	t0012	1880	2	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0013	1883	2	0	0	2	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0014	1882	2	0	0	2	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0015	1880	2	2	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0016	1881	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0017	1881	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0018	1882	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0019	1882	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0020	1877	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0021	1882	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0022	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0023	1881	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0024	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0025	1883	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690