JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP2_chr11_119350215_119386690	0/0	t0026	1880	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0027	1881	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0028	1882	1	0	0	0	1	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0029	1880	1	0	0	0	0	1	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0030	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0031	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0032	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0033	1880	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0034	1882	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0035	1881	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	t0036	1881	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP30_chr12_109047576_109093023	0/0	t0001	2202	146	11	29	83	9	14	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	1/1	t0002	2196	127	58	11	44	7	5	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0003	2196	64	10	13	31	1	9	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0004	2202	22	0	0	22	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0005	2196	7	7	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0006	2196	6	0	1	4	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0007	2196	4	0	1	0	0	3	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0008	2197	3	1	2	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0009	2196	3	0	0	0	0	3	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0010	2203	2	2	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0011	2202	1	0	0	1	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0012	2196	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0013	2196	1	0	0	0	1	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0014	2196	1	0	0	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0015	2196	1	0	1	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0016	2196	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0017	2196	1	0	0	1	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0018	2196	1	0	0	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0019	2196	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0020	2197	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0021	2196	1	0	0	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	t0022	2196	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP31_chr16_23056406_23154452	0/1	t0001	6823	53	27	8	6	5	6	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0002	6823	45	10	7	23	0	5	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0003	6824	23	0	3	14	1	5	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	1/0	t0004	6823	14	0	7	0	1	5	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0005	6823	11	2	3	6	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0006	6824	8	0	8	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0007	6823	7	7	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0008	6823	4	0	0	4	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0009	6823	4	3	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0010	6826	4	4	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0011	6821	4	1	0	3	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0012	6823	3	0	0	3	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0013	6823	3	0	3	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0014	6826	3	1	1	0	1	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0015	6827	3	0	2	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0016	6822	2	0	1	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0017	6823	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452