JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP31_chr16_23056406_23154452	0/0	t0018	6823	2	0	0	2	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0019	6822	2	0	1	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0020	6823	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0021	6822	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0022	6823	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0023	6823	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0024	6821	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0025	6826	2	0	1	0	1	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0026	6823	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0027	6823	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0028	6823	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0029	6823	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0030	6820	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0031	6822	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0032	6820	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0033	6823	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0034	6822	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0035	6822	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0036	6824	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0037	6823	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0038	6823	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0039	6822	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0040	6822	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0041	6822	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0042	6823	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0043	6823	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0044	6823	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0045	6823	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0046	6822	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0047	6823	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0048	6822	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0049	6824	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0050	6824	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0051	6826	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0052	6826	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0053	6825	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0054	6826	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0055	6826	1	0	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0056	6827	1	0	0	0	1	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0057	6826	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0058	6827	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0059	6826	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	t0060	6825	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP32_chr17_60172327_60397133	1/1	t0001	2123	120	42	30	40	0	6	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0002	2123	11	9	2	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0003	2123	9	9	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0004	2123	8	8	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0005	2123	2	2	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0006	2123	1	1	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	t0007	2123	1	1	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133