JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP33_chr1_77690987_77764852	1/1	t0001	1592	249	85	43	83	8	28	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0002	1592	50	0	2	47	0	1	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0003	1592	7	0	0	7	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0004	1592	3	3	0	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0005	1592	3	0	0	3	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0006	1592	3	0	0	3	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0007	1592	2	0	1	0	0	1	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	t0008	1592	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP34_chr2_61182463_61476087	0/0	t0001	1031	122	43	21	45	6	7	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/1	t0002	1031	52	3	15	24	2	7	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	1/0	t0003	1035	49	13	3	25	1	6	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0004	1036	14	1	1	11	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0005	1032	13	3	1	6	2	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0006	1032	12	1	0	8	0	3	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0007	1032	9	0	3	6	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0008	1032	5	0	2	2	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0009	1031	4	4	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0010	1036	4	0	0	4	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0011	1037	3	1	0	1	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0012	1032	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0013	1032	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0014	1037	2	0	1	0	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0015	1033	2	0	0	0	0	2	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0016	1031	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0017	1027	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0018	1033	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0019	1033	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0020	1031	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0021	1032	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0022	1028	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0023	1037	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0024	1036	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0025	1036	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0026	1033	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0027	1031	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0028	1031	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0029	1031	1	0	0	0	1	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	t0030	1031	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP35_chr11_78183919_78220232	0/1	t0001	1672	47	7	11	23	1	4	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0002	1654	42	2	8	26	2	4	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0003	1671	35	11	4	15	1	4	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0004	1673	32	5	8	9	5	5	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0005	1655	31	0	9	20	0	2	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0006	1669	22	0	0	19	0	3	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0007	1670	21	0	0	15	0	6	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	1/0	t0008	1669	14	0	3	10	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0009	1656	14	1	1	9	0	3	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0010	1674	11	3	2	2	2	2	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0011	1669	10	2	5	0	1	2	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0012	1670	10	6	2	2	0	0	copy fasta	USP35	chr11	78183919	78220232