JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP35_chr11_78183919_78220232	0/0	t0013	1655	9	0	3	6	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0014	1658	7	7	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0015	1675	6	0	6	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0016	1671	4	0	0	3	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0017	1679	3	1	1	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0018	1654	3	0	0	3	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0019	1656	3	0	1	1	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0020	1657	3	0	1	2	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0021	1656	3	1	1	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0022	1632	3	3	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0023	1645	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0024	1668	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0025	1668	2	0	0	2	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0026	1670	2	0	0	2	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0027	1672	2	0	0	0	0	2	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0028	1632	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0029	1654	2	0	0	2	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0030	1651	2	0	1	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0031	1622	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0032	1624	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0033	1657	2	1	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0034	1657	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0035	1645	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0036	1678	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0037	1668	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0038	1670	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0039	1660	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0040	1659	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0041	1671	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0042	1688	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0043	1656	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0044	1652	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0045	1647	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0046	1666	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0047	1668	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0048	1652	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0049	1669	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0050	1669	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0051	1670	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0052	1671	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0053	1682	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0054	1671	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0055	1671	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0056	1672	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0057	1685	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0058	1684	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0059	1688	1	0	0	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0060	1676	1	0	0	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0061	1669	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0062	1671	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232