JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
C13orf46_chr13_113948705_113979076	0/0	t0050	3063	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0051	3068	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0052	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0053	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0054	3040	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0055	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0056	3040	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0057	3017	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0058	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0059	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0060	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0061	3040	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0062	3068	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0063	3088	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0064	3088	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0065	3065	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0066	3065	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0067	3045	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0068	3045	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0069	3065	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0070	3065	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0071	3065	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0072	3065	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0073	3088	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0074	3065	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0075	3065	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0076	3068	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0077	3088	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0078	3108	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0079	3108	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0080	3108	1	0	1	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0081	3125	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0082	3105	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0083	3088	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0084	3128	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0085	3128	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0086	3128	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0087	2086	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0088	3105	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0089	3128	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0090	3128	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0091	3128	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0092	3105	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0093	3128	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0094	3148	1	1	0	0	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0095	3097	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0096	3148	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0097	3148	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0098	3148	1	0	0	1	0	copy fasta	C13orf46	chr13	113948705	113979076
C13orf46_chr13_113948705_113979076	0/0	t0099	3148	1	0	0	0	1	copy fasta	C13orf46	chr13	113948705	113979076