JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP35_chr11_78183919_78220232	0/0	t0063	1658	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0064	1658	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0065	1669	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0066	1671	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0067	1631	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0068	1652	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0069	1653	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0070	1652	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0071	1655	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0072	1656	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0073	1657	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0074	1655	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0075	1658	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0076	1654	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0077	1655	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0078	1623	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0079	1658	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0080	1652	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0081	1626	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0082	1657	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0083	1631	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0084	1671	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0085	1670	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0086	1669	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0087	1670	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0088	1670	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0089	1671	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0090	1707	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0091	1652	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	t0092	1646	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP36_chr17_78790652_78845814	1/1	t0001	2501	150	36	31	60	4	17	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0002	2501	94	5	24	47	7	11	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0003	2501	33	2	0	22	0	9	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0004	2501	22	1	0	21	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0005	2501	11	0	4	7	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0006	2501	10	10	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0007	2501	7	7	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0008	2501	6	6	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0009	2501	5	5	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0010	2501	5	5	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0011	2501	5	0	0	5	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0012	2501	4	4	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0013	2501	4	4	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0014	2501	4	0	1	0	1	2	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0015	2501	3	2	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0016	2500	3	2	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0017	2501	3	0	0	3	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0018	2501	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0019	2501	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0020	2501	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814