JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP36_chr17_78790652_78845814	0/0	t0021	2501	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0022	2501	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0023	2501	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0024	2501	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0025	2501	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0026	2501	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0027	2501	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0028	2501	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0029	2501	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0030	2501	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0031	2519	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0032	2501	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0033	2501	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	t0034	2501	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP37_chr2_218445251_218573351	0/1	t0001	5091	82	0	16	49	6	10	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0002	5091	72	11	20	23	6	12	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0003	5093	31	5	0	22	0	4	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0004	5091	15	14	1	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0005	5091	10	10	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0006	5088	10	10	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0007	5093	9	0	0	9	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0008	5091	9	8	1	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0009	5091	6	4	0	0	0	2	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0010	5088	4	4	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0011	5091	3	3	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0012	5090	3	3	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	1/0	t0013	5083	3	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0014	5091	3	3	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0015	5093	2	0	0	2	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0016	5090	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0017	5093	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0018	5088	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0019	5091	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0020	5091	2	0	0	2	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0021	5093	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0022	5083	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0023	5091	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0024	5088	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0025	5091	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0026	5091	1	0	1	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0027	5091	1	0	0	1	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0028	5083	1	0	1	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0029	5091	1	0	0	1	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	t0030	5091	1	0	0	1	0	0	copy fasta	USP37	chr2	218445251	218573351
USP38_chr4_143179917_143228874	0/1	t0001	3952	92	17	23	37	3	11	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	1/0	t0002	3953	73	14	13	32	0	13	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0003	3952	19	16	3	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0004	3952	13	13	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0005	3952	12	9	1	0	0	2	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0006	3952	11	1	3	1	3	3	copy fasta	USP38	chr4	143179917	143228874