JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP38_chr4_143179917_143228874	0/0	t0007	3952	8	7	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0008	3954	5	5	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0009	3953	4	0	2	0	2	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0010	3952	3	3	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0011	3952	2	2	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0012	3952	2	2	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0013	3952	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0014	3953	1	0	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0015	3953	1	0	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0016	3952	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0017	3952	1	0	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0018	3952	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0019	3952	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0020	3952	1	0	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0021	3952	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0022	3952	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0023	3952	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0024	3952	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0025	3953	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	t0026	3953	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP39_chr2_85611186_85654283	0/0	t0001	485	194	79	20	76	4	15	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	1/1	t0002	486	153	6	46	68	6	25	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	t0003	485	1	1	0	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	t0004	485	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	t0005	486	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP3_chr15_63499593_63599633	0/0	t0001	3953	46	10	10	16	5	5	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	1/0	t0002	3955	43	5	14	15	1	7	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/1	t0003	3954	18	8	6	0	0	3	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0004	3956	14	0	8	0	0	6	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0005	3949	11	1	5	0	4	1	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0006	3958	9	3	2	0	1	3	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0007	3954	8	8	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0008	3955	8	3	5	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0009	3955	7	6	1	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0010	3955	7	7	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0011	3954	5	5	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0012	3952	4	2	1	0	1	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0013	3954	3	0	3	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0014	3954	3	3	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0015	3955	3	0	1	2	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0016	3958	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0017	3954	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0018	3955	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0019	3953	2	0	2	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0020	3953	2	1	1	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0021	3955	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0022	3955	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0023	3954	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0024	3956	2	0	0	0	2	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0025	3952	2	0	0	2	0	0	copy fasta	USP3	chr15	63499593	63599633