JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP3_chr15_63499593_63599633	0/0	t0026	3955	1	0	0	0	0	1	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0027	3954	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0028	3954	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0029	3955	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0030	3953	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0031	3954	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0032	3953	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0033	3954	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0034	3943	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0035	3955	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0036	3954	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0037	3955	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0038	3955	1	0	0	0	0	1	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0039	3955	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0040	3955	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0041	3955	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0042	3955	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0043	3956	1	0	0	0	0	1	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0044	3956	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0045	3954	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0046	3954	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0047	3957	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0048	3958	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0049	3954	1	0	0	1	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	t0050	3954	1	0	1	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP40_chr2_233470526_233571782	1/1	t0001	1985	161	34	32	71	7	15	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0002	1985	39	0	10	25	3	1	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0003	1985	26	10	4	4	6	2	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0004	1985	16	16	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0005	1985	15	0	0	15	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0006	1985	11	0	0	11	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0007	1985	10	1	3	2	2	2	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0008	1985	8	5	0	3	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0009	1985	6	6	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0010	1985	5	5	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0011	1985	5	5	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0012	1985	4	0	0	4	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0013	1985	3	3	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0014	1985	3	3	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0015	1985	3	0	3	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0016	1985	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0017	1985	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0018	1985	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0019	1985	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0020	1985	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0021	1985	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0022	1985	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0023	1985	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	t0024	1985	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP42_chr7_6099949_6166564	1/1	t0001	1140	377	81	75	163	14	42	copy fasta	USP42	chr7	6099949	6166564