JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP42_chr7_6099949_6166564	0/0	t0002	1140	5	4	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0003	1140	4	4	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0004	1140	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0005	1140	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0006	1140	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0007	1140	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0008	1140	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	t0009	1140	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP43_chr17_9640517_9734687	1/1	t0001	814	285	74	37	136	6	30	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0002	814	14	14	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0003	814	8	5	1	2	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0004	814	5	0	3	0	2	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0005	814	4	0	0	4	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0006	812	3	0	0	3	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0007	814	3	2	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0008	814	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0009	814	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0010	814	1	0	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0011	814	1	0	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0012	814	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0013	814	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	t0014	814	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP44_chr12_95511560_95556476	0/0	t0001	1870	109	26	16	50	2	15	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0002	1870	67	9	10	38	2	8	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	1/0	t0003	1870	41	4	16	17	1	2	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0004	1869	40	3	7	23	3	4	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0005	1870	25	1	1	22	1	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0006	1869	22	13	1	0	2	6	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0007	1873	17	0	5	7	0	5	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/1	t0008	1869	12	0	3	4	3	1	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0009	1869	10	0	0	9	1	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0010	1877	10	10	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0011	1870	9	1	8	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0012	1873	4	0	0	4	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0013	1869	4	4	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0014	1877	4	3	1	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0015	1870	3	3	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0016	1870	2	0	1	0	1	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0017	1868	2	2	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0018	1878	2	2	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0019	1869	2	0	0	1	0	1	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0020	1870	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0021	1870	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0022	1870	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0023	1869	1	0	1	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0024	1873	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0025	1873	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0026	1869	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0027	1870	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0028	1870	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476