JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP44_chr12_95511560_95556476	0/0	t0029	1870	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0030	1870	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0031	1870	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0032	1878	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0033	1872	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0034	1873	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0035	1868	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	t0036	1868	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP45_chr6_99427325_99520423	0/0	t0001	3436	95	18	25	32	4	16	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/1	t0002	3436	94	15	11	52	4	11	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0003	3436	76	0	20	52	0	4	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0004	3430	41	1	7	24	5	4	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0005	3436	23	1	17	0	2	3	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0006	3436	15	13	0	0	0	2	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0007	3433	8	7	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0008	3434	8	8	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0009	3436	7	0	1	5	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	1/0	t0010	3434	7	5	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0011	3436	5	5	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0012	3436	4	3	0	0	1	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0013	3436	2	2	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0014	3436	2	1	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0015	3436	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0016	3436	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0017	3430	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0018	3436	1	0	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0019	3436	1	0	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0020	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0021	3436	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0022	3436	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0023	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0024	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0025	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0026	3436	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0027	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0028	3436	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0029	3436	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0030	3436	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0031	3434	1	0	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0032	3436	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	t0033	3436	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP46_chr4_52585960_52664301	1/1	t0001	6832	104	33	17	42	7	3	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0002	6832	32	11	5	12	4	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0003	6831	12	12	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0004	6832	7	7	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0005	6832	7	0	0	7	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0006	6831	4	4	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0007	6832	3	0	1	0	2	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0008	6832	2	0	0	2	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0009	6831	2	2	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301