JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP46_chr4_52585960_52664301	0/0	t0010	6832	2	1	0	0	1	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0011	6832	2	2	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0012	6832	1	0	0	0	0	1	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0013	6831	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0014	6832	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0015	6831	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0016	6832	1	0	1	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0017	6831	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0018	6832	1	0	1	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0019	6832	1	0	0	1	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0020	6832	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0021	6832	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0022	6832	1	0	0	1	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0023	6832	1	0	1	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0024	6832	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0025	6832	1	0	0	1	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	t0026	6832	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP47_chr11_11836972_11966887	0/0	t0001	5927	62	9	14	24	5	10	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/1	t0002	5929	55	1	18	18	5	12	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	1/0	t0003	5927	55	2	12	32	1	7	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0004	5929	44	4	2	31	1	6	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0005	5931	32	0	8	18	2	4	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0006	5931	17	0	0	17	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0007	5927	14	0	1	9	0	4	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0008	5927	11	11	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0009	5927	10	9	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0010	5928	10	10	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0011	5920	7	7	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0012	5929	6	0	4	0	1	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0013	5927	5	5	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0014	5929	5	5	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0015	5927	4	3	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0016	5929	3	2	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0017	5927	3	3	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0018	5927	3	3	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0019	5927	3	2	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0020	5927	2	2	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0021	5929	2	0	0	2	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0022	5852	2	0	0	2	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0023	5929	2	0	1	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0024	5929	2	2	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0025	5927	2	2	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0026	5931	2	0	0	2	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0027	5929	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0028	5929	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0029	5929	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0030	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0031	5927	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0032	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0033	5927	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887