JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP47_chr11_11836972_11966887	0/0	t0034	5929	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0035	5929	1	0	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0036	5929	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0037	5929	1	0	0	0	1	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0038	5927	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0039	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0040	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0041	5927	1	0	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0042	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0043	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0044	5927	1	0	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0045	5929	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0046	5927	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0047	5927	1	0	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0048	5929	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	t0049	5931	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP48_chr1_21673298_21788149	1/1	t0001	1312	285	69	47	121	10	36	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0002	1312	58	8	17	21	4	8	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0003	1312	13	12	1	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0004	1312	2	0	2	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0005	1302	1	0	1	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0006	1312	1	0	0	1	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0007	1312	1	0	0	0	0	1	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0008	1312	1	0	0	0	0	1	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0009	1312	1	0	0	1	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	t0010	1312	1	1	0	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP49_chr6_41784896_41900375	0/1	t0001	6875	135	23	28	55	5	23	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0002	6875	51	1	11	32	3	4	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0003	6874	40	3	2	26	2	7	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0004	6876	24	4	19	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0005	6875	23	6	1	15	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0006	6874	15	6	6	0	2	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0007	6875	10	0	0	10	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0008	6874	7	7	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0009	6875	7	6	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	1/0	t0010	6874	6	4	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0011	6876	6	0	0	6	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0012	6874	4	4	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0013	6875	4	4	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0014	6876	3	3	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0015	6875	3	3	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0016	6876	2	0	0	2	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0017	6875	2	0	0	0	0	2	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0018	6875	2	2	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0019	6875	1	0	0	0	1	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0020	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0021	6874	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0022	6874	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0023	6908	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0024	6875	1	0	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375