JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP49_chr6_41784896_41900375	0/0	t0025	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0026	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0027	6875	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0028	6875	1	0	0	0	1	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0029	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0030	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0031	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0032	6875	1	0	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0033	6875	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0034	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0035	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0036	6875	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0037	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0038	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0039	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0040	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0041	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0042	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0043	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0044	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0045	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0046	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0047	6875	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0048	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0049	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0050	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0051	6875	1	0	0	1	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0052	6875	1	0	0	0	0	1	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0053	6871	1	0	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0054	6871	1	0	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0055	6871	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0056	6875	1	0	1	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0057	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP49_chr6_41784896_41900375	0/0	t0058	6875	1	1	0	0	0	0	copy fasta	USP49	chr6	41784896	41900375
USP4_chr3_49272144_49345053	0/0	t0001	1178	169	63	42	42	6	16	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	1/1	t0002	1179	22	2	8	1	5	4	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0003	1178	18	0	7	6	3	2	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0004	1178	12	12	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0005	1178	2	2	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0006	1179	1	0	1	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0007	1178	1	1	0	0	0	0	copy fasta	USP4	chr3	49272144	49345053
USP4_chr3_49272144_49345053	0/0	t0008	1178	1	0	0	1	0	0	copy fasta	USP4	chr3	49272144	49345053
USP50_chr15_50495562_50551666	1/1	t0001	349	357	94	64	150	14	33	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	t0002	349	24	0	4	17	0	3	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	t0003	349	1	1	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	t0004	349	1	0	0	1	0	0	copy fasta	USP50	chr15	50495562	50551666
USP50_chr15_50495562_50551666	0/0	t0005	349	1	1	0	0	0	0	copy fasta	USP50	chr15	50495562	50551666
USP51_chrX_55479616_55494848	0/0	t0001	2508	107	4	16	69	4	14	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/1	t0002	2508	67	38	16	4	3	5	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0003	2508	64	5	14	39	1	5	copy fasta	USP51	chrX	55479616	55494848