JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP6NL_chr10_11455510_11616650	0/0	t0014	2221	7	6	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0015	2219	7	1	0	5	1	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0016	2229	6	0	0	2	1	3	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0017	2215	5	4	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/1	t0018	2222	5	0	2	0	2	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0019	2225	4	1	1	0	0	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0020	2227	4	2	1	0	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0021	2224	4	0	2	2	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0022	2213	3	0	0	0	0	3	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0023	2223	3	2	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0024	2223	3	0	3	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0025	2235	3	0	0	2	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0026	2221	3	0	0	3	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0027	2221	3	3	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0028	2231	2	0	2	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0029	2215	2	2	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0030	2217	2	0	0	0	0	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0031	2220	2	0	1	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0032	2219	2	2	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0033	2217	2	2	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0034	2222	2	0	0	2	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0035	2219	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0036	2221	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0037	2225	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0038	2219	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0039	2213	1	0	0	0	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0040	2217	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0041	2231	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0042	2229	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0043	2227	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0044	2227	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0045	2217	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0046	2217	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	1/0	t0047	2223	1	0	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0048	2217	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0049	2222	1	0	0	0	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0050	2218	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0051	2206	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0052	2218	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0053	2212	1	0	0	0	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6_chr17_5111032_5179991	1/0	t0001	4649	90	11	11	59	0	8	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0002	4649	44	8	4	29	1	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0003	4649	37	5	16	6	2	8	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0004	4649	29	0	4	24	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0005	4649	20	18	2	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0006	4649	19	3	5	9	1	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0007	4649	16	0	2	12	0	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/1	t0008	4649	12	3	4	0	2	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0009	4649	10	1	4	0	2	3	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0010	5057	7	0	5	0	2	0	copy fasta	USP6	chr17	5111032	5179991