JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP6_chr17_5111032_5179991	0/0	t0011	4649	6	2	0	3	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0012	4649	6	6	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0013	4649	5	5	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0014	4649	5	0	5	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0015	4649	4	4	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0016	4650	3	0	0	3	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0017	4649	3	3	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0018	4649	3	0	1	1	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0019	4649	2	0	0	0	2	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0020	4649	2	0	1	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0021	4649	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0022	4649	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0023	4649	2	0	0	2	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0024	4649	2	0	2	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0025	4649	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0026	5057	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0027	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0028	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0029	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0030	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0031	4649	1	0	1	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0032	4649	1	0	1	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0033	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0034	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0035	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0036	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0037	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0038	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0039	4649	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0040	4649	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0041	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0042	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0043	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0044	4649	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0045	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0046	4683	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0047	4615	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0048	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0049	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0050	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0051	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0052	4649	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0053	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	t0054	4649	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP7_chr16_8887097_8968906	0/0	t0001	2521	134	27	31	57	3	16	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0002	2525	96	19	15	49	1	12	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0003	2522	22	3	2	14	0	3	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0004	2526	16	7	4	4	0	1	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0005	2524	9	4	1	4	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	1/0	t0006	2523	7	6	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906