JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP7_chr16_8887097_8968906	0/0	t0007	2523	7	0	3	2	1	1	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0008	2524	5	3	0	0	2	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0009	2518	4	3	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0010	2525	3	0	3	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0011	2521	2	0	0	2	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0012	2523	2	2	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0013	2525	2	0	2	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0014	2523	2	2	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/1	t0015	2525	2	0	1	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0016	2525	2	0	0	0	0	2	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0017	2521	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0018	2522	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0019	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0020	2521	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0021	2521	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0022	2523	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0023	2523	1	0	0	0	1	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0024	2525	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0025	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0026	2526	1	0	0	0	0	1	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0027	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0028	2521	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0029	2521	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0030	2521	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0031	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0032	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0033	2524	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0034	2527	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0035	2528	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0036	2525	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0037	2526	1	1	0	0	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0038	2521	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP7_chr16_8887097_8968906	0/0	t0039	2521	1	0	0	1	0	0	copy fasta	USP7	chr16	8887097	8968906
USP8_chr15_50419405_50519421	0/0	t0001	15496	8	0	0	7	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0002	15506	7	0	0	7	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0003	15505	6	0	0	5	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0004	15507	5	0	0	5	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0005	15499	4	0	1	3	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0006	15498	4	0	1	3	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0007	15504	4	0	1	0	0	3	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0008	15506	4	0	0	4	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0009	15507	4	3	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/1	t0010	15505	4	1	1	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0011	15506	4	0	0	4	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0012	15503	3	0	3	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0013	15506	3	2	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0014	15506	3	0	0	3	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0015	15505	3	0	0	3	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0016	15499	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0017	15506	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421